PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v0415900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family E2F/DP
Protein Properties Length: 372aa    MW: 42119.1 Da    PI: 9.1998
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v0415900.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP741.6e-231580171
          E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                     rk+ksL+ll+++fl+l++k+    + l++++++L    v  +rRRiYDi+NVLe+++++++k+kn+++wkg
  Lj1g3v0415900.1 15 RKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRL---GV--ERRRIYDIVNVLESVGMLARKAKNQYTWKG 80
                     79*****************999************...**..****************************98 PP

2E2F_TDP75.74.7e-24146225171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                      rkeksL+lltq+f+kl+ +s+ ++v+l+++ak L+ +     +++k+RR+YDi+NVL+++nliek     ++k+++rw g
  Lj1g3v0415900.1 146 RKEKSLTLLTQNFVKLFVCSNIQMVSLDDAAKLLLGNvdtaMMRTKVRRLYDIANVLSSINLIEKthmaeSRKPAFRWLG 225
                      79********************************99999*999**********************9999999******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-251181IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.52E-151478IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.5E-261580IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.8E-191680IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.6E-24142227IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.0E-29146225IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.6E-20147225IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.54E-12148226IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MSSSTTSSRH HTYNRKQKSL GLLCTNFLSL YNKEGIHLIG LDDACSRLGV ERRRIYDIVN  60
VLESVGMLAR KAKNQYTWKG FAVIPEALRE LKDEGLKENL FDAANDSAKV SDDEYDEEAN  120
PATGSQNDKS NSDSATLVKS SQNENRKEKS LTLLTQNFVK LFVCSNIQMV SLDDAAKLLL  180
GNVDTAMMRT KVRRLYDIAN VLSSINLIEK THMAESRKPA FRWLGLKGKT RSESGNSAQD  240
PNTNESRKRL FGSDITNISF KRNKVDLFMN EGDFYKNSNM ENKHDNLNCQ GQSEKSNSKQ  300
DAKQTTGCYQ FGPFAPRKVG ASENDNVKQV HDWESLAKAH RPQYENLALR DLFSHYTEAW  360
KSWYSEVAGK RP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A6e-41142173228Transcription factor E2F8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105850.0AP010585.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjB05K02, BM1960, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016203170.10.0PREDICTED: E2F transcription factor-like E2FE
SwissprotQ8LSZ41e-122E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLA0A0S3RGB40.0A0A0S3RGB4_PHAAN; Uncharacterized protein
STRINGGLYMA05G01760.21e-172(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36683366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-123DP-E2F-like 1